Command line basics
for genomic analysis at OSC

A workshop by the MCIC & CAPS on August 17 - 19, 2022.


Schedule

Day Module Instructor Time
Day 1 1. Introduction to the Workshop Mike / Jelmer Wed 1:00 - 1:15 pm
2. The Ohio Supercomputer Center (OSC) Mike Wed 1:15 - 2:00 pm
3. The VS Code Text Editor Jelmer Wed 2:00 - 2:15 pm
4. The Unix Shell (& FASTQ files) Mike Wed 2:30 - 4:30 pm
Day 2 5. Variables, Globbing and Loops Jelmer Thu 12:00 - 1:00 pm
6. Shell Scripting Jelmer Thu 1:15 - 2:30 pm
Day 3 7. Using Software at OSC Jelmer Fri 1:00 - 1:45 pm
8. Compute Jobs with Slurm Jelmer Fri 1:45 - 3:00 pm
9. Batch Jobs in Practice Mike / Jelmer Fri 3:15 - 4:30 pm
The schedule is approximate

Start and end times for every day will be respected, but individual modules may take shorter or longer than indicated below. The instructors will be available for additional questions from about 15 minutes before we start and for about 30 minutes after we end each day.