Command line basics
for genomic analysis at OSC

A workshop by the MCIC & CAPS on August 17 - 19, 2022.

Schedule

Day	Module	Instructor	Time
Day 1	1. Introduction to the Workshop	Mike / Jelmer	Wed 1:00 - 1:15 pm
	2. The Ohio Supercomputer Center (OSC)	Mike	Wed 1:15 - 2:00 pm
	3. The VS Code Text Editor	Jelmer	Wed 2:00 - 2:15 pm
	4. The Unix Shell (& FASTQ files)	Mike	Wed 2:30 - 4:30 pm
Day 2	5. Variables, Globbing and Loops	Jelmer	Thu 12:00 - 1:00 pm
	6. Shell Scripting	Jelmer	Thu 1:15 - 2:30 pm
Day 3	7. Using Software at OSC	Jelmer	Fri 1:00 - 1:45 pm
	8. Compute Jobs with Slurm	Jelmer	Fri 1:45 - 3:00 pm
	9. Batch Jobs in Practice	Mike / Jelmer	Fri 3:15 - 4:30 pm

The schedule is approximate

Start and end times for every day will be respected, but individual modules may take shorter or longer than indicated below. The instructors will be available for additional questions from about 15 minutes before we start and for about 30 minutes after we end each day.